-
"Ionic current blockade due to spherical and ellipsoidal nanoparticles in a nanopore", D. Melnikov, N. Barker, M. Gracheva, in review Physical Review (February 2024)
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(Special Issue) "New perspectives on molecular simulation of chemistry and physics in external electric fields", D. Melnikov, M. Gracheva, G. Kusalik Phys. Chem. Chem. Phys. 24, 28660-28661 (2022).
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"Springer Book on Solid state nanopore devices for DNA sequencing, Chapter, The Ionic Current Nanopores Blockade in Solid State", D. Melnikov, M. Gracheva, (Editor) Jean-Pierre Leburton (June 2022).
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(Invited Paper)"Brownian dynamics of cylindrical capsule-like particles in a nanopore in an electrically biased solid-state membrane", C. Wells, D. Melnikov, M. Gracheva, Physical Chemistry Chemical Physics} 24, 2958-965, January (2022).
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"Multiscale simulations of charge and size separation of nanoparticles with a solid-state nanoporous membrane", C. Wells,
D. Melnikov, J. Cirillo, M. Gracheva, Phys. Rev. E 102, 063104 (2020).
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(Journal Cover) "Concentration Polarization, Surface Charge, and Ionic Current Blockade in Nanopores", D. Melnikov, Z. Hulings, M. Gracheva,
J. Phys. Chem. C 124, 36, 19802–19808 (2020).
-
"Atomistic model of a ceria nanoparticle with Ce3+ and Ce4+ atoms", A. Sinitsyn, M. Gracheva, Nanotechnology 31, 315708 (2020).
-
"Brownian dynamics of a neutral protein moving through a nanopore in an electrically biased membrane", C. Wells,
D. Melnikov, M. Gracheva, J. Chem. Phys. 150(11), p. 115103 (2019).
-
"Brownian dynamics simulations of the ionic current traces for a
neutral nanoparticle translocating through a nanopore", Zachery Hulings,
D. Melnikov, M. Gracheva, Nanotechnology 29(44), p.445204 (2018).
-
"Brownian dynamics of a protein-polymer chain complex in a solid-state nanopore", C. Wells, D. Melnikov, M. Gracheva, J. Chem. Phys. 147(5), p. 054903 (2017).
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"Electro-osmotic flow through nanopores in thin and ultrathin membranes", Zachery Hulings, D. Melnikov, M. Gracheva, Phys. Rev. E 95(6), p. 063105(1-8) (2017).
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"Protein permeation through an electrically tunable membrane", I. Jou, D. Melnikov, M. Gracheva, Nanotechnology 27(20), p. 205201 (2016).
-
"Nanopore gating with an anchored polymer in a switching
electrolyte bias", C. Wells, I. Jou, D. Melnikov, M. Gracheva, J. Chem. Phys. 144(10), p. 104901 (2016).
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"Charged nanoparticle in a nanochannel: Competition between electrostatic
and dielectrophoretic forces", Zachery Hulings, D. Melnikov, M. Gracheva, Phys. Rev. E 91(6), p. 062713(1-7) (2015).
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"Pores with Longitudinal Irregularities Distinguish Objects by
Shape", Yinghua Qiu, Preston Hinkle, Crystal Yang, Henriette E. Bakker,
Hong Wang,
Matthew Schiel, Dmitriy Melnikov, Maria Gracheva, Maria Eugenia
Toimil-Molares, Arnout Imhof, Zuzanna S. Siwy, ACS Nano 9 (4), p. 4390-4397 (2015).
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(Invited Paper) "Poisson-Nernst-Planck model for an ionic
transistor based on a semiconductor membrane", A. Nikolaev, M. Gracheva,
Journal of Computational Electronics (Special Issue) 13(4), p. 818-825 (2014).
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"Charged particle separation by electrically tunable nanoporous
membrane", Ining A. Jou, D. Melnikov, A. Nadtochiy, M.E. Gracheva, Nanotechnology
25 (14), p. 14521(1-9) (2014).
-
"Filtering of nanoparticles with tunable semiconductor
membranes", A. Nadtochiy, D. Melnikov, M.E. Gracheva, ACS Nano 7 (8),
p. 7053-7061 (2013).
-
"DNA translocation through a nanopore in a single-layered doped
semiconductor membrane", I. Jou, D. Melnikov, C. McKinney, M.E. Gracheva, Physical Review E
86, p. 061906 (2012).
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"Slowing down and stretching out DNA with an electrically
tunable nanopore in a p-n semiconductor membrane", D. Melnikov, J.-P. Leburton,
M.E. Gracheva, Nanotechnology
23, p. 25501 (2012).
-
"Simulation of ionic current through the nanopore in a
double-layered semiconductor membrane", A. Nikolaev, M. Gracheva, Nanotechnology
22(16), p. 165202 (2011).
-
"Polymer translocation through an electrically tunable nanopore
in a multilayered semiconductor membrane", D. Melnikov, A. Nikolaev, J.-P.
Leburton, M.E. Gracheva, Book Chapter in "Nanopore-based technology: single
molecule characterization and DNA sequencing", edited by M.E. Gracheva, p.
187-210, Humana Press (2012), ISBN 978-1-61779-772-9, DOI
10.1007/978-1-61779-773-6. (Methods Mol Biol; 2012;870:187-207).
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"Simulation of electronic sensing of biomolecules in
translocation through a nanopore in a semiconductor membrane", M.E. Gracheva, A.
Leroux, J. Destine, J.-P. Leburton, Book Chapter in "Nanopores: sensing and
fundamental biological interactions", edited by S.M. Iqbal and R. Bashir, p. - ,
Springer 2010.
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"SPICE-circuit simulation of the electrical response of
semiconductor membrane to a single-stranded DNA translocating through a
nanopore", A. Leroux, J. Destine, B. Vanderheyden, M.E. Gracheva, J.-P.
Leburton, IEEE
Transactions on Nanotechnology 9(3), p. 322-329 (2010).
-
"A model of fibroblast motility on substrates with different
rigidities", I. Dokukina, M. Gracheva, Biophysical
Journal 98(12), p. 2794-2803 (2010).
-
"Multilayered semiconductor membranes for nanopore ionic
conductance modulation", M.E. Gracheva, D.V. Melnikov and J.-P. Leburton, ACS Nano 2(11),
p. 2349-2355 (2008).
-
"Simulation of electrically tunable semiconductor nanopores for
ion current/single bio-molecule manipulation", M.E. Gracheva, J.-P. Leburton, J. Comput.
Electronics 7(1), p. 6-9 (2008).
-
"P-n semiconductor membrane for electrically tunable ion current
rectification and filtering", M.E. Gracheva, J. Vidal and J.-P. Leburton, NanoLetters
7(6), p. 1717-1722 (2007).
(This article was featured in: www.physorg.com, www.nsf.gov,
IOP, Beckman Institute, NCSA, Electrical and computer engineering Department of
UIUC and around the world)
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"Role of network connectivity in intercellular calcium
signaling", I.V. Dokukina, M.E. Gracheva, E.A. Grachev and J.D. Gunton, Physica D 237,
p. 745-754 (2008).
-
"The influence of the tissue structure on intercellular calcium
signaling", I.V. Dokukina, A.A. Tsukanov, M.E. Gracheva and E.A. Grachev,
Biophyzika, 53(2), p. 305-314 (2008) (in Russian).
-
"Electrolytic charge inversion at the liquid-solid interface in
a nanopore in a doped semiconductor membrane", M.E. Gracheva and J.-P. Leburton,
Nanotechnology
18, p. 145704-145710 (2007).
-
"Electrically Tunable Solid-State Silicon Nanopore Ion Filter",
J. Vidal, M.E. Gracheva and J.-P. Leburton, Nanoscale
Research Letters 2, p. 61-68 (2007).
-
(Journal Cover) "Electrical Signatures of Single-Stranded DNA with Single Base
Mutations in a Nanopore Capacitor", M.E. Gracheva, A. Aksimentiev and J.-P.
Leburton, Nanotechnology
17(13), p. 3160-3165 (2006).
-
"Simulation of the electric response of DNA translocation
through a semiconductor nanopore-capacitor", M.E. Gracheva, A. Xiong, A.
Aksimentiev, K. Schulten, G. Timp and J.-P. Leburton, Nanotechnology
17(3), p. 622-633 (2006).
(Highly accessed paper - top 10% of Institute of Physics
(IOP) Publishing)
-
"Modulation of mitochondrial calcium dynamics by cytosolic
buffer proteins and cellular plasma membrane fluxes", I.V. Dokukina, M.E.
Gracheva, E.A. Grachev, Moscow State University Physics Bulletin (Vestnik
Moskovskogo Universiteta, Fizika) 2, p. 23-26 (2007).
-
"A finite-size scaling study of a model of globular proteins",
D. Pagan, M.E. Gracheva, J.D. Gunton, J. of Chemical
Physics 120(17) p. 8292-8298 (2004).
-
"A continuum model of motility in amoeboid cells", M.E. Gracheva
and H.G. Othmer, Bulletin of
Mathematical Biology 66, p. 167-193 (2004).
-
"The role of noise in some physical and biological systems",
J.D. Gunton, R. Toral, C. Mirasso, M.E. Gracheva, in book "Recent Research
Developments in Applied Physics", eds. M. Kawasaki, N. Ashgriz, R. Anthony
(2003). [pdf]
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"Intercellular communication via intracellular calcium
oscillations", M.E. Gracheva and J.D. Gunton, J. of Theor. Biology
221(4), pp. 513-518 (2003).
-
"Stochastic simulation of intercellular calcium spiking in
hepatocytes", M.E. Gracheva, R. Toral and J.D. Gunton, J. Theor. Biology
212, p. 111-125 (2001).
-
"Coarse-grained Ginzburg-Landau free energy for Lennard-Jones
systems",M.E. Gracheva, J.M. Rickman and J.D. Gunton, J. Chem. Phys.
113(9), p. 3525-3529 (2000).
-
"Phase transitions in a two-dimensional vortex system with
defects: Monte Carlo simulation", V.A. Kashurnikov, I.A. Rudnev, M.E. Gracheva,
O.A. Nikitenko, Journal of
Experimental and Theoretical Physics 117, p. 196 (2000).
-
"Phase transitions in a two-dimensional vortex lattice with
defects: Monte Carlo simulation", I.A. Rudnev, V.A. Kashurnikov, M.E. Gracheva,
O.A. Nikitenko, Physica C 332, p.
383 (2000).
-
"Vortex lattice melting in layered HTSC in the field of
defects", M.E. Gracheva, V.A. Kashurnikov, I.A. Rudnev, O.A. Nikitenko, Low
Temperature Physics 25(10), p.765 (1999).
-
"Dynamics of vortex lattice in the current state in
high-temperature superconductors: Monte Carlo method", M.E. Gracheva, V.A.
Kashurnikov, I.A. Rudnev, Low Temperature Physics 25(2), p.105 (1999).
-
"Phase diagram of layered HTSC: simulation by means of Monte
Carlo method", M.E. Gracheva, V.A. Kashurnikov, I.A. Rudnev, Physics of
low-dimensional structures 9/10, 202-208 (1998).
-
"Monte Carlo simulation of phase transitions in the vortex
system of high-temperature superconductors", M.E. Gracheva, M.V. Katargin, V.A.
Kashurnikov, I.A. Rudnev, Low Temperature Physics 23(11), p.863 (1997).
-
"Features of the melting dynamics of a vortex lattice in a
high-Tc superconductor in the presence of pinning centers", M.E. Gracheva, V.A.
Kashurnikov, I.A. Rudnev, JETP Letters 66,
p.269-274, (1997).
-
"Monte-Carlo simulation of the two-dimensional vortex lattice
melting in high-temperature superconductors with defects", M.E. Gracheva, V.A.
Kashurnikov, I.A. Rudnev, Physics of low-dimensional structures 8/9, 125-134
(1997).
© Maria Gracheva, 2010