Here are some useful links:


Summary of the characteristics of the 43 investigated organisms

Here we summarize the Notre Dame data.


The color code of the fields denotes the different domains of life:
     Archaea Bacterium Eukaryote

The networks created from the original data are directed, but undirected projections have then been generated. Clicking on Edges and Edgesd takes you to the corresponding B matrix.


Model Organism Name / Links Nodes Edges Edgesd
1 AP Aeropyrum pernix 517 1148 1163
2 AG Archaeoglobus fulgidus 1281 2980 3011
3 TH Methanobacterium thermoautotrophicum 1138 2682 2705
4 MJ Methanococcus jannaschii 1103 2561 2589
5 PF Pyrococcus furiosus 790 1752 1768
6 PH Pyrococcus horikoshii 807 1781 1796
7 AA Aquifex aeolicus 1105 2503 2527
8 CQ Chlamydia pneumoniae 412 786 792
9 CT Chlamydia trachomatis 467 935 941
10 CY Synechocystis sp. 1486 3499 3528
11 PG Porphyromonas gingivalis 1052 2330 2348
12 MB Mycobacterium bovis 1102 2447 2468
13 ML Mycobacterium leprae 1106 2495 2515
14 MT Mycobacterium tuberculosis 1534 3655 3685
15 BS Bacillus subtilis 2217 5427 5535
16 EF Enterococcus faecalis 1049 2433 2462
17 CA Clostridium acetobutylicum 1349 3170 3202
18 MG Mycoplasma genitalium 490 1030 1060
19 MP Mycoplasma pneumoniae 420 926 936
20 PN Streptococcus pneumoniae 1116 2595 2629
21 ST Streptococcus pyogenes 1087 2529 2577
22 CL Chlorobium tepidum 953 2144 2159
23 RC Rhodobacter capsulatus 1808 4248 4296
24 RP Rickettsia prowazekii 469 1006 1014
25 NG Neisseria gonorrhoeae 1104 2531 2568
26 NM Neisseria meningitidis 1032 2359 2393
27 CJ Campylobacter jejuni 993 2228 2257
28 HP Helicobacter pylori 996 2291 2325
29 EC Escherichia coli 2316 5627 5763
30 TY Salmonella typhi 2403 5822 5959
31 YP Yersinia pestis 1534 3403 3469
32 AB Actinobacillus actinomycetemcomitans 1046 2336 2368
33 HI Haemophilus influenzae 1484 3423 3519
34 PA Pseudomonas aeruginosa 2023 4790 4851
35 TP Treponema pallidum 506 1101 1117
36 BB Borrelia burgdorferi 433 861 880
37 TM Thermotoga maritima 863 1967 1980
38 DR Deinococcus radiodurans 2337 5588 5681
39 EN Emericella nidulans 976 2164 2176
40 SC Saccharomyces cerevisiae 1559 3807 3833
41 CE Caenorhabditis elegans 1207 2842 2864
42 OS Oryza sativa 708 1505 1514
43 AT Arabidopsis thaliana 737 1585 1593