44. Schulte II, J. A. 2013. Undersampling taxa will underestimate molecular divergence dates: An example from the South American lizard clade Liolaemini. International Journal of Evolutionary Biology 2013:1-12. Article ID 628467, doi:10.1155/2013/628467.

43. Halamkova, L., J. A. Schulte II, and T. A. Langen. 2013. Patterns of sexual size dimorphism in Chelonia. Biological Journal of the Linnean Society 108: 396-413.

42. Moreno Azocar, D. L., B. Vanhooydonck, M. F. Bonino, M. G. Perotti, C. S. Abdala, J. A. Schulte II, and F. B. Cruz. 2013. Chasing the Patagonian sun: Comparative thermal biology of Liolaemus lizards. Oecologia 171:773-788.

41. Collar, D. C., J. A. Schulte II, and J. B. Losos. 2011. Evolution of extreme body size disparity in monitor lizards (Varanus). Evolution 65: 2664-2680.

40. Melville, J., E. G. Ritchie, S. N. J. Chapple, R. E. Glor, and J. A. Schulte II. 2011. Evolutionary origins and diversification of dragon lizards in Australia's tropical savannah woodlands. Molecular Phylogenetics and Evolution 58: 257-270.

39. Harmon, L. J., J. B. Losos, T. J. Davies, R. Gillespie, J. L. Gittleman, W. B. Jennings, K. Kozak, M. McPeek, F. Moreno-Roarck, T. Near, A. Purvis, R. E. Ricklefs, D. Schluter, J. A. Schulte II, O. Seehausen, B. L. Sidlauskas, O. Torres-Carvajal, J. T. Weir, A. O. Mooers. 2010. Early bursts of body size and shape evolution are rare in comparative data. Evolution 64: 2385-2396.

38. Schulte II, J. A., F. Moreno-Roark. 2010. Live birth among iguanian lizards predates Pliocene-Pleistocene glaciations. Proceedings of the Royal Society of London, Biological Sciences, Biology Letters 6:216-218.

37. Collar, D. C., J. A. Schulte II, B. C. O'Meara, J. B. Losos. 2010. Habitat use affects morphological diversification in dragon lizards. Journal of Evolutionary Biology 23:1033-1049.

36. Wyngaard, G. A., M. Holynskya, J. A. Schulte II. 2010. Phylogeny of the freshwater copepod Mesocyclops (Crustacea: Cyclopidae) based on combined data, with notes on biogeography. Molecular Phylogenetics and Evolution 55:753-764.

35. Schulte II, J. A., E. M. Cartwright. 2008. Phylogenetic relationships among iguanian lizards using alternative partitioning methods and TSHZ1:  A new phylogenetic marker for reptiles. Molecular Phylogenetics and Evolution 50:391-396.

34. Schulte II, J.A., K. de Queiroz. 2008. Phylogenetic relationships and heterogeneous evolutionary processes among phrynosomatine sand lizards (Squamata, Iguanidae) revisited. Molecular Phylogenetics and Evolution 47:700-716.

33. Revell, L., M. A. Johnson, J. A. Schulte II, J. J. Kolbe, J. B. Losos. 2007. A phylogenetic test for adaptive convergence in rock-dwelling lizards. Evolution 61: 2898-2912.

32. Pincheira-Donoso, D., J. A. Scolaro, J. A. Schulte II. The limits of polymorphism in Liolaemus rothi: Molecular and phenotypic evidence for a new species of the Liolaemus boulengeri clade (Iguanidae, Liolaemini) from boreal Patagonia of Chile. Zootaxa 1452:25-42.

31. Macey, J. R., J. A. Schulte II, J. L. Strasburg, J. A. Brisson, N. B. Ananjeva, Y. Wang, J. F. Parham, T. J. Papenfuss. 2006. Assembly of the Eastern North American herpetofauna: New evidence from lizards and frogs. Proceedings of the Royal Society of London, Biological Sciences, Biology Letters 2:388-392.

30. Schulte II, J. A., J. R. Macey, T. J. Papenfuss. 2006. A genetic perspective on the geographic association of taxa among arid North American lizards of the Sceloporus magister complex (Squamata: Iguanidae: Phrynosomatinae). Molecular Phylogenetics and Evolution 39:873-880.

29. Torres-Carvajal, O., J. A. Schulte II, J. E. Cadle. 2006. Phylogenetic relationships of South American lizards of the genus Stenocercus (Squamata: Iguania): a new approach using a general mixture model for gene sequence data. Molecular Phylogenetics and Evolution 39:171-185.

28. Macey, J. R., J. A. Schulte II, J. J. Fong, I. Das, T J. Papenfuss. 2006. The complete mitochondrial genome of an agamid lizard from the Afro-Asian subfamily Agaminae and the phylogenetic position of Bufoniceps and Xenagama. Molecular Phylogenetics and Evolution 39:881-886.

27. Zug, G. R., H. H. K. Brown, J. A. Schulte II, J. V. Vindum. 2006. Systematics of the Garden Lizards, Calotes versicolor group (Reptilia, Squamata, Agamidae), in Myanmar: Central dry zone populations. Proceedings of the California Academy of Sciences 57:35-68.

26. Cruz, F. B., L. A. Fitzgerald, R. E. Espinoza, J. A. Schulte II. 2005. The importance of phylogenetic scale in tests of Bergmann's and Rapoport's rules: lessons from a clade of South American lizards. Journal of Evolutionary Biology 18:1559-1574.

25. Schulte II, J. A., J. V. Vindum, H. Win, T. Thin, K. S. Lwin, A. K. Shein, H. Tun. 2004. Phylogenetic relationships of the genus Ptyctolaemus (Squamata: Agamidae), with a description of a new species from the Chin Hills of Western Myanmar. Proceedings of the California Academy of Sciences 55:222-247.

24. Schulte II, J. A., J. B. Losos, F. B. Cruz, H. Nunez. 2004. The relationship between morphology, escape behaviour and microhabitat occupation in the lizard clade Liolaemus (Iguanidae: Tropidurinae*: Liolaemini). Journal of Evolutionary Biology 17:408-420. Supplementary Material - Ecology, Morphology

23. Melville J., J. A. Schulte II, A. Larson. 2004. A molecular study of phylogenetic relationships and evolution of antipredator strategies in the Australian Diplodactylus geckos, subgenus Strophurus. Biological Journal of the Linnean Society 82:123-138.

22. Schulte II, J. A., J. P. Valladares, A. Larson. 2003. Phylogenetic relationships within Iguanidae inferred using molecular and morphological data and a phylogenetic taxonomy of iguanian lizards. Herpetologica 59:399-419.

21. Harmon, L. J., J. A. Schulte II, J. B. Losos, A. Larson. 2003. Tempo and mode of evolutionary radiation in iguanian lizards. Science 301:961-964. Supplementary Material.

20. Schulte II, J. A., J. Melville, A. Larson. 2003. Molecular phylogenetic evidence for ancient divergence of lizard taxa on either side of Wallace's Line. Proceedings of the Royal Society of London, B: Biological Sciences 270:597-603. Supplementary Material.

19. Schulte II, J. A., J. R. Macey, R. Pethiyagoda, A. Larson. 2002. Rostral horn evolution among agamid lizards of the genus Ceratophora endemic to Sri Lanka. Molecular Phylogenetics and Evolution 22:111-117.

18. Valladares, J. P., R. Etheridge, J. A. Schulte II, G. Manriquez, A. Spotorno. 2002. Nueva especie de lagartija para el altiplano de la segunda region de Chile, Liolaemus molinai. (Tropiduridae: Liolaeminae). Revista Chilena de Historia Natural 75: 473-489.

17. Losos, J. B., D. Creer, J. A. Schulte II. 2002. Cautionary comments on use of maximal sprint performance. Journal of Zoology, London 258:57-61.

16. Melville J., J. A. Schulte II. 2001. Correlates of active body temperatures and microhabitat occupation in nine species of central Australian agamid lizards. Austral Ecology 26:660-669.

15. Nunez, H., J. A. Schulte II, C. Garin. 2001. Liolaemus josephorum, nueva especie de lagartija para el norte de Chile. Boletin del Museo Nacional de Historia Natural, Chile 50:91-107.

14. Melville J., J. A. Schulte II, A. Larson. 2001. A molecular phylogenetic study of ecological diversification in the Australian lizard genus Ctenophorus. Journal of Experimental Zoology (Molecular and Developmental Evolution) 291:339-353.

13. Papenfuss, T. P., J. R. Macey, J. A. Schulte II. 2001. A new species of lizard (genus Xantusia) from Arizona. Scientific Papers of the University of Kansas Natural History Museum 23:1-9.

12. Ibarguengoytia, N., L. M. Casalins, J. A. Schulte II, G. C. Amico, L. Sympson. 2001. Geographic distribution. Liolaemus lineomaculatus. Herpetological Review 32:120.

11.Ibarguengoytia, N., J. A. Schulte II. 2001. Geographic distribution. Diplolaemus darwinii. Herpetological Review 32:57.

10.Schulte II, J. A., J. R. Macey, R. Espinoza, A. Larson. 2000. Phylogenetic relationships in the iguanid lizard genus Liolaemus: Multiple origins of viviparous reproduction and evidence for recurring Andean vicariance and dispersal. Biological Journal of the Linnean Society 69:75-102.

9. Macey, J. R., J. A. Schulte II, A. Larson, N. B. Ananjeva, Y. Wang, R. Pethiyagoda, N. Rastegar-Pouyani, T. J. Papenfuss. 2000. Evaluating Trans-Tethys migration: An example using acrodont lizard phylogenetics. Systematic Biology 49:233-256.

8. Macey, J. R., J. A. Schulte II, A. Larson. 2000. Evolution and information content of the mitochondrial genomic structural features illustrated with acrodont lizards. Systematic Biology 49:257-277.

7. Macey, J. R., J. A. Schulte II, H. G. Kami, N. B. Ananjeva, A. Larson, T. J. Papenfuss. 2000. Testing hypotheses of vicariance in the agamid lizard Laudakia caucasia from mountain ranges on the northern Iranian Plateau. Molecular Phylogenetics and Evolution 14:479-483.

6. Macey, J. R., J. A. Schulte II, A. Larson, B. S. Tuniyev, N. Orlov, T. J. Papenfuss. 1999. Molecular phylogenetics, tRNA evolution, and historical biogeography in anguid lizards and related taxonomic families. Molecular Phylogenetics and Evolution 12:250-272.

5. Cruz, F. B., J. A. Schulte II, P. Bellagamba. 1999. New distributional records and natural history notes for reptiles from southern Argentina. Herpetological Review 30:182-183.

4. Schulte II, J. A., J. R. Macey, A. Larson, T. J. Papenfuss. 1998. Molecular tests of phylogenetic taxonomies: A general procedure and example using four subfamilies of the lizard family Iguanidae. Molecular Phylogenetics and Evolution 10:367-376.

3. Macey, J. R., J. A. Schulte II, A. Larson, Z. Fang, Y. Wang, B. S. Tuniyev, T. J. Papenfuss. 1998. Phylogenetic relationships of toads in the Bufo bufo species group from the eastern escarpment of the Tibetan Plateau: A case of vicariance and dispersal. Molecular Phylogenetics and Evolution 9:80-87.

2. Macey, J. R., J. A. Schulte II, N. B. Ananjeva, A. Larson, N. Rastegar-Pouyani, S. M. Shammakov, T. J. Papenfuss. 1998. Phylogenetic relationships among agamid lizards of the Laudakia caucasia species group: Testing hypotheses of biogeographic fragmentation and an area cladogram for the Iranian Plateau. Molecular Phylogenetics and Evolution 10:118-131.

1. Macey, J. R., J. A. Schulte II, A. Larson, T. J. Papenfuss. 1998. Tandem duplication via light-strand synthesis may provide a precursor for mitochondrial genome rearrangement. Molecular Biology and Evolution 15:71-75.